Data files for the manuscript entitled, “Single nucleus RNA-sequencing integrated into risk variant colocalization discovers 17 cell-type-specific abdominal obesity genes for metabolic dysfunction-associated steatotic liver disease”

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Lee, Seung Hyuk T., 2024, "Data files for the manuscript entitled, “Single nucleus RNA-sequencing integrated into risk variant colocalization discovers 17 cell-type-specific abdominal obesity genes for metabolic dysfunction-associated steatotic liver disease”", https://doi.org/10.25346/S6/SXMNDW, UCLA Dataverse, V2
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Description
These are the summary statistics of the adipose and liver bulk RNA sequencing (RNA-seq) cis-eQTL analysis from Matrix-eQTL for our paper Lee SHT, Garske KM, Arasu UT, Kar A, Miao Z, Alvarez M, Koka A, Darci-Maher N, Benhammou JN, Pan DZ, Örd T, Kaminska D, Männistö V, Heinonen S, Wabitsch M, Laakso M, Agopian VG, Pisegna JR, Pietiläinen KH, Pihlajamäki J, Kaikkonen MU, Pajukanta P. Single nucleus RNA-sequencing integrated into risk variant colocalization discovers 17 cell-type-specific abdominal obesity genes for metabolic dysfunction-associated steatotic liver disease. EBioMedicine. 2024;106:105232. PMID: 38991381. Further details of these cis-eQTL analyses can be found in the Methods and Results part of this paper.
Subject Medicine, Health and Life Sciences
Related Publication Lee SHT, Garske KM, Arasu UT, Kar A, Miao Z, Alvarez M, Koka A, Darci-Maher N, Benhammou JN, Pan DZ, Örd T, Kaminska D, Männistö V, Heinonen S, Wabitsch M, Laakso M, Agopian VG, Pisegna JR, Pietiläinen KH, Pihlajamäki J, Kaikkonen MU, Pajukanta P. Single nucleus RNA-sequencing integrated into risk variant colocalization discovers 17 cell-type-specific abdominal obesity genes for metabolic dysfunction-associated steatotic liver disease. EBioMedicine. 2024;106:105232. PMID: 38991381.
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liver_MatrixEQTL_cis.txt.gz
Gzip Archive - 930.4 MB
Published Jul 29, 2024
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MD5: 6a7ab9f53017d3a42a1ab04d848da714
The summary level liver cis-eQTL analysis results
README.txt
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Published Jul 29, 2024
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MD5: 87990aee7bfa2387909f1fdb013866e3
README
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sat_MatrixEQTL_cis.txt.gz
Gzip Archive - 1.4 GB
Published Jul 29, 2024
5 Downloads
MD5: 11094ac8b2483f331686c703fbeb4d6d
The summary level subcutaneous adipose tissue cis-eQTL analysis results
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